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Resources

BY-COVID sustains many open science resources which contribute to the goal of making infectious disease data open and available for everyone. The resources listed below receive funding directly from the BY-COVID project.

SARS-CoV-2 Data Hubs

Data and tools to accelerate coronavirus research
Guidelines, examples and tools relating to infectious disease data

Pathogen Data Hubs

Data and tools to accelerate pathogen research
Mapping and interlinking databases, standards and policies
Packaging research data with their metadata
Describing, sharing and publishing scientific computational workflows

COVID-19 Disease Map

A repository of SARS-CoV-2 virus-host interaction mechanisms

BY-COVID citizen engagement

An educational toolkit on data sharing for pandemic preparedness

BY-COVID training materials

Course TitleHostCourse FormatCourse Duration 
European Nucleotide Archive - Quick TourEMBL-EBI, Cambridgeshire, UKonline30 minutes
ENA : SARS-CoV-2 Submission WorkshopEMBL-EBI, Cambridgeshire, UKonline2 hours
WP3 Discoverability hackathon v2 on Feb 8thEMBL-EBI, Tampere University, Finlandonline2 hours
Unlocking the Power of MetadataSIB Swiss Institute of Bioinformatics Sciensanoonline2 hours 45 minutes
FAIRsharing in a nutshellFAIRsharing, University of Oxfordonline10 minutes
FAIRsharing content: standards overviewFAIRsharing, University of Oxfordonline10 minutes
FAIRsharing content: databases overviewFAIRsharing, University of Oxfordonline10 minutes
FAIRsharing for you: researchersFAIRsharing, University of Oxfordonline10 minutes
FAIRsharing for you: journal publishersFAIRsharing, University of Oxfordonline10 minutes
FAIRsharing for you: fundersFAIRsharing, University of Oxfordonline10 minutes
GTN Smörgåsbord 2: Tapas - A Very Short Introduction to GalaxyGalaxy Training Networkonline10 minutes
GTN Smörgåsbord 2: Tapas - Galaxy 101Galaxy Training Networkonline13 minutes
GTN Smörgåsbord 2: Tapas - NGS data logistics Galaxy Training Networkonline15 minutes
GTN Smörgåsbord 2: Tapas - Quality controlGalaxy Training Networkonline40 minutes
GTN Smörgåsbord 2: Tapas - MappingGalaxy Training Networkonline10 minutes
GTN Smörgåsbord 2: Tapas - Using data collectionsGalaxy Training Networkonline13 minutes
GTN Smörgåsbord 2: Tapas - Removal of human reads from SARS-CoV-2 sequencing dataGalaxy Training Networkonline60 minutes
GTN Smörgåsbord 2: Tapas - SARS-CoV-2 Monitoring and Analysis with GalaxyGalaxy Training Networkonline13 minutes
GTN Smörgåsbord 2: Tapas - Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing dataGalaxy Training Networkonline1 hour 30 minutes
GTN Smörgåsbord 2: Tapas - Automating Galaxy workflows using the command lineGalaxy Training Networkonline30 minutes
GTN Smörgåsbord 2: Tapas - The usegalaxy.* SARS-CoV-2 Bot in ActionGalaxy Training Networkonline40 minutes
GTN Smörgåsbord 2: Tapas - Accelerating Research through data sharingGalaxy Training Networkonline13 minutes
GTN Smörgåsbord 2: Tapas - Upload to ENAGalaxy Training Networkonline10 minutes
GTN Smörgåsbord 2: Tapas - Uploading data to ENAGalaxy Training Networkonline10 minutes
GTN Smörgåsbord 2: Tapas - Introduction to viral BeaconGalaxy Training Networkonline24 minutes
GTN Smörgåsbord 2: Tapas - Using and Customising ObservableHQGalaxy Training Networkonline15 minutes
GTN Smörgåsbord 2: Tapas - SRA Aligned read format in GalaxyGalaxy Training Networkonline15 minutes
GTN Smörgåsbord 2: Tapas - Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome readsGalaxy Training Networkonline25 minutes
GTN Smörgåsbord 2: Tapas - Pandemics Research using Mass SpectrometryGalaxy Training Networkonline35 minutes
GTN Smörgåsbord 2: Tapas - Scripting Galaxy using the API and BioBlendGalaxy Training Networkonline
GTN Smörgåsbord 2: Tapas - Case Studies: What you can do with SARS-COV-2 dataGalaxy Training Networkonline32 minutes